If you use PyRPL for your research, please cite the following articles:

Greg M. Fleishman and Paul M. Thompson. Adaptive gradient descent optimization ofinitial momenta for geodesic shooting in diffeomorphisms. In BiomedicalImaging (ISBI 2017), 2017 IEEE 14th International Symposium on, pages 868–872. IEEE, 2017.

Greg M. Fleishman and Paul M. Thompson. The impact of matching functional onatrophy measurement from geodesic shooting in diffeomorphisms. In BiomedicalImaging (ISBI 2017), 2017 IEEE 14th International Symposium on, pages 873–877. IEEE, 2017. 

If you used the Symmetric Interleaved Geodesic Shooting in Diffeomorphisms (SIGSID) model, please cite the following article as well:


A list of papers that have used pyrpl:

Greg M Fleishman, P Thomas Fletcher, and Paul M Thompson. Symmetric interleaved geodesic shooting in diffeomorphisms. In International Conference on Information Processing in Medical Imaging, pages 583–593. Springer, Cham, 2017.

Greg M. Fleishman and Paul M Thompson. Adaptive gradient descent optimization of initial momenta for geodesic shooting in diffeomorphisms. In Biomedical Imaging (ISBI 2017), 2017 IEEE 14th International Symposium on, pages 868– 872. IEEE, 2017.

Greg M Fleishman and Paul M Thompson. The impact of matching functional on atrophy measurement from geodesic shooting in diffeomorphisms. In Biomedical Imaging (ISBI 2017), 2017 IEEE 14th International Symposium on, pages 873– 877. IEEE, 2017.

Greg M Fleishman, P Thomas Fletcher, Boris A Gutman, Gautam Prasad, Yingnian Wu, and Paul M Thompson. Geodesic refinement using James-Stein estimators. Mathematical Foundations of Computational Anatomy, 60.

Greg M Fleishman, Boris A Gutman, P Thomas Fletcher, and Paul Thompson. A transformation similarity constraint for groupwise nonlinear registration in longitudinal neuro imaging studies. In Proceedings of SPIE, volume 9413. NIH Public Access, 2015.

Greg M Fleishman, Boris A Gutman, P Thomas Fletcher, and Paul M Thompson. Simultaneous longitudinal registration with group-wise similarity prior. In International Conference on Information Processing in Medical Imaging, pages 746–757. Springer, Cham, 2015.